ProteoWizard
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#include <Reader.hpp>
Public Member Functions | |
Config () | |
Config (const Config &rhs) | |
Public Attributes | |
bool | simAsSpectra |
when true, sets certain vendor readers to produce SIM transitions as spectra instead of chromatograms More... | |
bool | srmAsSpectra |
when true, sets certain vendor readers to produce SRM transitions as spectra instead of chromatograms More... | |
bool | acceptZeroLengthSpectra |
when true, allows for skipping 0 length checks (and thus skip re-reading data for Sciex) More... | |
bool | ignoreZeroIntensityPoints |
when true, allows certain vendor readers to produce profile data without zero intensity samples flanking each peak profile More... | |
bool | combineIonMobilitySpectra |
when true, all drift bins/scans in a frame/block are written in combined form instead of as individual spectra More... | |
bool | unknownInstrumentIsError |
when true, if a reader cannot identify an instrument, an exception will be thrown asking users to report it More... | |
bool | adjustUnknownTimeZonesToHostTimeZone |
when true, if a reader does not know what time zone was used to record a time, it will assume the time refers to the host's local time; when false, the reader will treat times with unknown time zone as UTC More... | |
pwiz::util::IterationListenerRegistry * | iterationListenerRegistry |
progress listener for when initializing a file takes a long time, or the reader has to run a long process before continuing, such as centroiding all spectra at once instead of one at a time More... | |
int | preferOnlyMsLevel |
when nonzero, if reader can enumerate only spectra of ms level, it will (currently only supported by Bruker TDF) More... | |
Reader configuration.
Definition at line 44 of file Reader.hpp.
pwiz::msdata::Reader::Config::Config | ( | ) |
pwiz::msdata::Reader::Config::Config | ( | const Config & | rhs | ) |
bool pwiz::msdata::Reader::Config::simAsSpectra |
when true, sets certain vendor readers to produce SIM transitions as spectra instead of chromatograms
Definition at line 47 of file Reader.hpp.
bool pwiz::msdata::Reader::Config::srmAsSpectra |
when true, sets certain vendor readers to produce SRM transitions as spectra instead of chromatograms
Definition at line 50 of file Reader.hpp.
bool pwiz::msdata::Reader::Config::acceptZeroLengthSpectra |
when true, allows for skipping 0 length checks (and thus skip re-reading data for Sciex)
Definition at line 53 of file Reader.hpp.
bool pwiz::msdata::Reader::Config::ignoreZeroIntensityPoints |
when true, allows certain vendor readers to produce profile data without zero intensity samples flanking each peak profile
Definition at line 56 of file Reader.hpp.
bool pwiz::msdata::Reader::Config::combineIonMobilitySpectra |
when true, all drift bins/scans in a frame/block are written in combined form instead of as individual spectra
Definition at line 59 of file Reader.hpp.
Referenced by main().
bool pwiz::msdata::Reader::Config::unknownInstrumentIsError |
when true, if a reader cannot identify an instrument, an exception will be thrown asking users to report it
Definition at line 62 of file Reader.hpp.
bool pwiz::msdata::Reader::Config::adjustUnknownTimeZonesToHostTimeZone |
when true, if a reader does not know what time zone was used to record a time, it will assume the time refers to the host's local time; when false, the reader will treat times with unknown time zone as UTC
Definition at line 66 of file Reader.hpp.
pwiz::util::IterationListenerRegistry* pwiz::msdata::Reader::Config::iterationListenerRegistry |
progress listener for when initializing a file takes a long time, or the reader has to run a long process before continuing, such as centroiding all spectra at once instead of one at a time
Definition at line 71 of file Reader.hpp.
int pwiz::msdata::Reader::Config::preferOnlyMsLevel |
when nonzero, if reader can enumerate only spectra of ms level, it will (currently only supported by Bruker TDF)
Definition at line 74 of file Reader.hpp.
Referenced by main().